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The GDS markdown guide is available on GOV.UK.
However, its advice on some things is wrong. Here are the correct instructions.
Using sub or superscripts
For subscript, surround the text to change with the <sub> </sub> markdown.
...
This is an example of using superscript in text.
Linking to footnotes or references
Put the reference numbers in square brackets next to the text in the page, for example:
...